PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc038300.1_g00001.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family FAR1
Protein Properties Length: 176aa    MW: 19799.5 Da    PI: 10.155
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc038300.1_g00001.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR129.13.2e-092723191
                     FAR1 31 rtfvCskegkreeekkk..........tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91
                             r +vCs++g +   ++           + k+rr++ ++ + C ak+ ++++++g+++v+ +e++H+H+l++
  Itr_sc038300.1_g00001.1  2 RYLVCSRQGVKGGVSRPppgvngddggKAKQRRRQISNWVRCLAKIFLRRDNTGEFVVSIFEEKHTHPLCS 72
                             5689******9999988999******9999999************************************85 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.5E-6371IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 176 aa     Download sequence    Send to blast
MRYLVCSRQG VKGGVSRPPP GVNGDDGGKA KQRRRQISNW VRCLAKIFLR RDNTGEFVVS  60
IFEEKHTHPL CSESSRQFMR INRSLDSTQQ AFIASCLKAN IGTSQSFRLC KELMGTYGNI  120
GATSVDFHNF KRDLQSYVGR DEENRLALLF CADPVARANF LRFGDVISFD APTART
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA3136228
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G15090.12e-06FAR1 family protein